sampleSNPs  0.9
Fast ordered sampling of records from files
Classes | Variables
varfiles.hpp File Reference

Read and write genetic variant files. More...

#include <fstream>
#include <string>
#include <vector>
#include <unordered_map>
#include <cstdint>
#include <limits>
#include "populations.hpp"
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Classes

class  sampFiles::VarFile
 Base variant file class. More...
 
class  sampFiles::GbinFile
 Generic binary file base class. More...
 
class  sampFiles::GbinFileI
 Binary file input class. More...
 
class  sampFiles::GbinFileO
 Generic binary file output class. More...
 
class  sampFiles::BedFile
 BED file base class. More...
 
class  sampFiles::BedFileI
 BED file input class. More...
 
class  sampFiles::BedFileO
 BED file output class. More...
 
class  sampFiles::GtxtFile
 Generic text file base class. More...
 
class  sampFiles::GtxtFileI
 Text file input class. More...
 
class  sampFiles::GtxtFileO
 Generic text file output class. More...
 
class  sampFiles::TpedFile
 TPED file base class. More...
 
class  sampFiles::TpedFileI
 TPED file input class. More...
 
class  sampFiles::TpedFileO
 TPED file output class. More...
 
class  sampFiles::VcfFile
 VCF file base class. More...
 
class  sampFiles::VcfFileI
 VCF file input class. More...
 
class  sampFiles::VcfFileO
 VCF file output class. More...
 
class  sampFiles::HmpFile
 Hapmap (HMP) file base class. More...
 
class  sampFiles::HmpFileI
 HMP file input class. More...
 
class  sampFiles::HmpFileO
 HMP file output class. More...
 

Variables

const double sampFiles::EPS = numeric_limits<double>::epsilon()
 Machine \(\epsilon\).
 
const double sampFiles::PI = 3.14159265358979323846264338328
 pi
 

Detailed Description

Read and write genetic variant files.

Author
Anthony J. Greenberg
Version
0.1

Definitions and interface documentation for classes that read and write various genetic variant file formats.

Currently supported formats: