sampleSNPs  0.9
Fast ordered sampling of records from files
Public Member Functions | List of all members
sampFiles::VcfFile Class Reference

VCF file base class. More...

#include <varfiles.hpp>

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Public Member Functions

 VcfFile ()
 Default constructor.
 VcfFile (const string &fileName)
 Constructor with file name. More...
 VcfFile (const VcfFile &in)=default
 Copy constructor.
VcfFileoperator= (const VcfFile &in)=default
 Copy assignment.
 VcfFile (VcfFile &&in)=default
 Move constructor.
VcfFileoperator= (VcfFile &&in)=default
 Move assignment.
 ~VcfFile ()
void open ()
 Open stream (does nothing)
void close ()
 Close stream.
- Public Member Functions inherited from sampFiles::GtxtFile
 GtxtFile ()
 Default constructor.
 GtxtFile (const string &fileName)
 Constructor with file name. More...
 GtxtFile (const string &fileName, const bool &head)
 Constructor with file name and header indicator. More...
 GtxtFile (const GtxtFile &in)=default
 Copy constructor.
GtxtFileoperator= (const GtxtFile &in)=default
 Copy assignment.
 GtxtFile (GtxtFile &&in)=default
 Move constructor.
GtxtFileoperator= (GtxtFile &&in)=default
 Move assignment.
 ~GtxtFile ()
- Public Member Functions inherited from sampFiles::VarFile
 VarFile (const VarFile &in)=default
 Copy constructor.
VarFileoperator= (const VarFile &in)=default
 Copy assignment.
 VarFile (VarFile &&in)=default
 Move constructor.
VarFileoperator= (VarFile &&in)=default
 Move assignment.
 ~VarFile ()

Additional Inherited Members

- Protected Member Functions inherited from sampFiles::VarFile
 VarFile ()
 Default constructor (protected)
- Protected Attributes inherited from sampFiles::GtxtFile
string _fileName
 File name.
bool _head
 Is there a header?
- Protected Attributes inherited from sampFiles::VarFile
fstream _varFile
 Variant file stream.

Detailed Description

VCF file base class.

Sets up streams for VCF files. Any accompanying .idx files are ignored.

Constructor & Destructor Documentation

◆ VcfFile()

sampFiles::VcfFile::VcfFile ( const string &  fileName)

Constructor with file name.

[in]fileNamefile name
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The documentation for this class was generated from the following files: